Preparing Accelerometer Data for SVM - c#

I am trying to classify activities by feeding the acceleration data from my phone into a SVM, which I'm implementing in C# with Accord. The problem is that I don't know how to prepare the data.
One of the Problems is that the SVM seems to only take 2 dimensional Input, but the data I get has 3 Dimensions of course. Do I have to transform the Data somehow first?
The second Problem I have is that I get the data like following:
1 x:1502 y:2215 z:2153
1 x:1667 y:2072 z:2047
1 x:1611 y:1957 z:1906
2 x:1904 y:2367 z:2034
2 x:1905 y:2375 z:2023
2 x:1892 y:2379 z:2027
But I can't classify an activity by one row, since that is only a snapshot, only one frame while the activity is performed. So my guess is that it should look more something like this:
1 {x:1502 y:2215 z:2153}, {x:1667 y:2072 z:2047}, {x:1611 y:1957 z:1906}
2 {x:1904 y:2367 z:2034}, {x:1905 y:2375 z:2023}, {x:1892 y:2379 z:2027}
And then again, how can i feed this kind of data to my SVM?
Thanks in advance :)

Yes you can, it is called a sequence in classification.
To do that you can use Hidden Markov Classifier or Hidden Conditional Random Field Learning or a Dynamic Time Warp Support Vector Machine.
See Accord.net wiki section "Sequence classification"

Related

How to create an object based matrix in C#?

Say I need to create a group of person's relationship matrix as following
x
Joe
Alice
Linda
Joe
-1
4
3
Alice
2
-1
3
Linda
3
3
-1
Using arraylists or MultiDimensional array is kinda confusing to looping and calculating to me, as I have to create another pair to bind each array index to the person's object. just wondering if there's any better way to access/modify values in such matrix structure, tks
Edit:
To be more clear, I'm wondering if there's any existing libraries to help making such matrix easier, my main issue to use multiDimensional arr[row,col], then bind it with Person's list requires some additional works to structure it properly. If something like [Joe,Alice], [Linda, Joe] out of box would make my life easier, lol
at last, it is my C# skill to be blamed :(

3D Data Interpolation in C#

I'm looking for a simple function in C# to interpolate my 3D data.
Given is already a list with around 100-150 data sets and 3 double values.
-25.000000 -0.770568 2.444945
-20.000000 -0.726583 2.467809
-15.000000 -0.723274 2.484167
-10.000000 -0.723114 2.506445
and so on...
The chart created by these values looks usually like this, I'm not sure if this counts as scattered or rather still gridded data ...
In the end I want to hand over two double values and get the third then from the interpolation function. It shouldn't flatten the surface, it should still go through all the given data points.
Since I'm not given the time to look into all possible algorithms and lack the mathematical background I'm a bit overwhelmed by all the possibilities that I get thrown at: Kriging, Delauney triangulation, NURBs and many more ...
In addition to that most solutions I found in the net were either for a different language, outdated or are charged by the time (e.g ilnumerics, still not sure if they have the solution)
In matlab there exists a griddata function that does exactly this (and is based on a kriging algorithm as far as I know) but in this case C# is mandatory for me.
Thank you for your help and criticism and suggestions are welcome.

Predicting new (unknown) sequence values using aforge GA

I've been messing around with the aforge time series genetic algorithm sample and I've got my own version working, atm it's just 'predicting' Fibonacci numbers.
The problem is when I ask it to predict new values beyond the array I've given it (which contains the first 21 numbers of the sequence, using a window size of 5) it won't do it, it throws an exception that says "Data size should be enough for window and prediction".
As far as I can tell I'm supposed to decipher the bizarre formula contained in "population.BestChromosome" and use that to extrapolate future values, is that right? Is there an easier way? Am I overlooking something massively obvious?
I'd ask on the aforge forum but the developer is not supporting it anymore.
As far as I can tell I'm supposed to decipher the bizarre formula
contained in "population.BestChromosome" and use that to extrapolate
future values, is that right?
What you call a "bizarre formula" is called a model in data analysis. You learn such a model from past data and you can feed it new data to get a predicted outcome. Whether that new outcome makes sense or is just garbage depends on how general your model is. Many techniques can learn very good models that explain the observed data very well, but which are not generalizable and will return unuseful results when you feed new data into the model. You need to find a model that both explains the given data as well as potentially unobserved data which is a non-trivial process. Usually people estimate the generalization error of that model by splitting the known data into two partitions: one with which the model is learned and another one on which the learned models are tested. You then want to select that model which is accurate on both data. You can also check out the answer I gave on another question here which also treats the topic of machine learning: https://stackoverflow.com/a/3764893/189767
I don't think you're "overlooking something massively obvious", but rather you're faced with a problem that is not trivial to solve.
Btw, you can also use genetic programming (GP) in HeuristicLab. The model of GP is a mathematical formula and in HeuristicLab you can export that model to e.g. MatLab.
Ad Fibonacci, the closed formula for Fibonacci numbers is F(n) = (phi^n - psi^n) / sqrt(5) where phi and psi are special magic numbers according to wikipedia. If you want to find that with GP you need one variable (n), three constants, and the power function. However, it's very likely that you find a vastly different formula that is similar in output. The problem in machine learning is that very different models can produce the same output. The recursive form requires that you include the values of the past two n into the data set. This is similar to learning a model for a time series regression problem.

LibSVM turns all my training vectors into support vectors, why?

I am trying to use SVM for News article classification.
I created a table that contains the features (unique words found in the documents) as rows.
I created weight vectors mapping with these features. i.e if the article has a word that is part of the feature vector table that location is marked as 1 or else 0.
Ex:- Training sample generated...
1 1:1 2:1 3:1 4:1 5:1 6:1 7:1 8:1 9:1
10:1 11:1 12:1 13:1 14:1 15:1 16:1
17:1 18:1 19:1 20:1 21:1 22:1 23:1
24:1 25:1 26:1 27:1 28:1 29:1 30:1
As this is the first document all the features are present.
I am using 1, 0 as class labels.
I am using svm.Net for classification.
I gave 300 weight vectors manually classified as training data and the model generated is taking all the vectors as support vectors, which is surely overfitting.
My total features (unique words/row count in feature vector DB table) is 7610.
What could be the reason?
Because of this over fitting my project is now in pretty bad shape. It is classifying every article available as a positive article.
In LibSVM binary classification is there any restriction on the class label?
I am using 0, 1 instead of -1 and +1. Is that a problem?
You need to do some type of parameter search, also if the classes are unbalanced the classifier might get artificially high accuracies without doing much. This guide is good at teaching basic, practical things, you should probably read it
As pointed out, a parameter search is probably a good idea before doing anything else.
I would also investigate the different kernels available to you. The fact that you input data is binary might be problematic for the RBF kernel (or might render it's usage sub-optimal, compared to another kernel). I have no idea which kernel could be better suited, though. Try a linear kernel, and look around for more suggestions/idea :)
For more information and perhaps better answers, look on stats.stackexchange.com.
I would definitely try using -1 and +1 for your labels, that's the standard way to do it.
Also, how much data do you have? Since you're working in 7610-dimensional space, you could potentially have that many support vectors, where a different vector is "supporting" the hyperplane in each dimension.
With that many features, you might want to try some type of feature selection method like principle component analysis.

Permutation/Algorithm to Solve Conditional Fill Puzzle

I've been digging around to see if something similar has been done previously, but have not seen anything with the mirrored conditions. To make swallowing the problem a little easier to understand, I'm going to apply it in the context of filling a baseball team roster.
The given roster structure is organized as such: C, 1B, 2B, 3B, SS, 2B/SS (either or), 1B/3B, OF, OF, OF, OF, UT (can be any position)
Every player has at least one of the non-backup positions (positions that allow more than one position) where they're eligible and in many cases more than one (i.e. a player that can play 1B and OF, etc.). Say that you are manager of a team, which already has some players on it and you want to see if you have room for a particular player at any of your slots or if you can move one or more players around to open up a slot where he is eligible.
My initial attempts were to use a conditional permutation and collect in a list all the possible unique "lineups" for each player, updating the open slots before moving to the next player. This also required (since the order that the player was moved would affect what positions were available for the next player) that the list being looped through was reordered and then looped through again. I still think that this is the way to go, but there are a number of pitfalls that have snagged the function.
The data to start the loop that you assume is given is:
1. List of positions the player being evaluated can player (the one being checked if he can fit)
2. List of players currently on the roster and the positions each of those is eligible at (I'm currently storing a list of lists and using the list index as the unique identifier of the player)
3. A list of the positions open as the roster currently is
It's proven a bigger headache than I originally anticipated. It was even suggested to me by a colleague that the situation I have (which involves, on a much larger scale, conditional assignments for each object) was NP-complete. I am certain that it is not, since once a player has been repositioned in a particular lineup being tested, the entire roster should not need to be iterated over again once another player has moved. That's the long and short of it and I finally decided to open it up to the forums.
Thanks for any help anyone can provide. Due to restrictions, I can't post portions of code (some of it is legacy). It is, however, being translated in .NET (C# at the moment). If there's additional information necessary, I'll try and rewrite some of the short pieces of the function for post.
Joseph G.
EDITED 07/24/2010
Thank you very much for the responses. I actually did look into using a genetic algorithm, but ultimately abandoned it because of the amount of work that would go into the determination of ordinal results was superfluous. The ultimate aim of the test is to determine if there is, in fact, a scenario that returns a positive. There's no need to determine the relative benefit of each working solution.
I appreciate the feedback on the likely lack of familiarity with the context I presented the problem. The actual model is in the distribution of build commands across multiple platform-specific build servers. It's accessible, but I'd rather not get into why certain build tasks can only be executed on certain systems and why certain systems can only execute certain types of build commands.
It appears that you have gotten the gist of what I was presenting, but here's a different model that's a little less specific. There are a set of discrete positions in an ordered array of lists as such (I'll refer to these as "positions"):
((2), (2), (3), (4), (5), (6), (4, 6), (3, 5), (7), (7), (7), (7), (7), (2, 3, 4, 5, 6, 7))
Additionally, there is a an unordered array of lists (I'll refer to as "employees") that can only occupy one of the slots if its array has a member in common with the ordered list to which it would be assigned. After the initial assignments have been made, if an additional employee comes along, I need to determine if he can fill one of the open positions, and if not, if the current employees can be rearranged to allow one of the positions the employee CAN fill to be made available.
Brute force is something I'd like to avoid, because with this being on the order of 40 - 50 objects (and soon to be increasing), individual determinations will be very expensive to calculate at runtime.
I don't understand baseball at all so sorry if I'm on the wrong track. I do like rounders though, but there are only 2 positions to play in rounders, a batter or everyone else.
Have you considered using Genetic Algorithms to solve this problem? They are very good at solving NP hard problems and work surprisingly well for rota and time schedule type problems as well.
You have a solution model which can easily be scored and easily manipulated which is a great start for a genetic algorithm.
For more complex problems where the total permutations are too large to calculate a genetic algorithm should find a near optimum or excellent solution (along with lots and lots of other valid solutions) in a fairly short amount of time. Although if you wish the find the optimum solution every time, you are going to have to brute force it in all likelihood (I have only skimmed the problem so this may not be the case but it sounds like it probably is).
In your example, you would have a solution class, this represents a solution, IE a line-up for the baseball team. You randomly generate say 20 solutions, regardless if they are valid or not, then you have a rating algorithm that rates the solution. In your case, a better player in the line-up would score more than a worse player, and any invalid line-ups (for whatever reason) would force a score of 0.
Any 0 scoring solutions are killed off, and replaced with new random ones, and the rest of the solutions breed together to form new solutions. Theoretically and after enough time the pool of solutions should improve.
This has the benefit of not only finding lots of valid unique line-ups, but also rating them. You didn't specify in your problem the need to rate the solutions, but it offers plenty of benefits (for example if a player is injured, he can be temporarily rated as a -10 or whatever). All other players score based on their quantifiable stats.
It's scalable and performs well.
It sounds as though you have a bipartite matching problem. One partition has a vertex for each player on the roster. The other has a vertex for each roster position. There is an edge between a player vertex and a position vertex if and only if the player can play that position. You are interested in matchings: collections of edges such that no endpoint is repeated.
Given an assignment of players to positions (a matching) and a new player to be accommodated, there is a simple algorithm to determine if it can be done. Direct each edge in the current matching from the position to the player; direct the others from the player to the position. Now, using breadth-first search, look for a path from the new player to an unassigned position. If you find one, it tells you one possible series of reassignments. If you don't, there's no matching with all of the players.
For example, suppose player A can play positions 1 or 2
A--1
\
\
2
We provisionally assign A to 2. Now B shows up and can only play 2. Direct the graph:
A->1
<
\
B->2
We find a path B->2->A->1, which means "assign B to 2, displacing A to 1".
There is lots of pretty theory for dealing with hypothetical matchings. Genetic algorithms need not apply.
EDIT: I should add that because of the use of BFS, it computes the least disruptive sequence of reassignments.

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